STRUCTURAL BIOINFORMATICS
TUTORIAL PAGE

Structural Bioinformatics I

Spring Syllabus

Structural Bioinformatics II

Fall 2007 Syllabus
PROJECT #2: "Exploring Conformational Space of Cardioglycosies"
Due date: TBA
NO REPORTS WILL BE ACCEPTED AFTER 30 DAYS!
Lecture slides : Docking, Drug Design
Setting a VNC connection from outside of UMDNJ click here

PROJECT #3: "DRUG DESIGN"
Due date: 12am Sunday, December 16th, 2007
MOLBANK for project: molbank.tar
Download and unpack: tar -xvf molbank.tar

JMedChem: Instructions for Authors

Dr. Welsh's Lecture
Color PDF file
B&W PDF file

PROJECT #3: Similarity-Dissimilarity Tutorial
Due date: TBA

Files for Similarity-Dissimilarity Tutorial
Database ER.mdb
Query 1
Query 2
Query 3

DOCK 6.0 Tutorial - LINUX version
PDF file
Files for DOCK tutorial
grid.in
dock.in

Molecular Mechanics

Tutorial: PDF file

Lecture slides

AutoDockTools (ADT) Guide - LINUX version
PDF file

Conformational Search

Tutorial: PDF file

Lecture slides

Ouabain structure for MOE Tutorial: ouabain.mol2

GOLD Tutorial
PDF file

GRASP Tutorial
PDF file

Files for GRASP tutorial
cef_pep.pdb

VLADYSLAV KHOLODOVYCH, PH.D.

Research Teaching Specialist
Department of Pharmacology
Robert Wood Johnson Medical School
University of Medicine & Dentistry
of New Jersey (UMDNJ)
675 Hoes Lane
Piscataway, NJ 08854
Phone: 732-235-3229
Fax: 732-235-3475
e-Fax: 240-597-7268
e-mail: kholodvl@umdnj.edu